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Tutorial single pathline mbo-removal
Appendix - Microbial organism removal functions
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Index
A
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C
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D
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E
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F
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G
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H
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K
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L
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M
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O
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P
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R
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S
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T
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V
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W
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X
A
alpha (sutra2.Transport_Removal.Transport attribute)
alpha0 (sutra2.Transport_Removal.Transport attribute)
alpha0: 'reference sticky coefficient', for a reference pH [pH0]
alpha: 'sticky coefficient', pH corrected
AnalyticalWell (class in sutra2.Analytical_Well)
assign_material() (sutra2.ModPath_Well.ModPathWell method)
assign_wellloc() (sutra2.ModPath_Well.ModPathWell method)
axisym_correction() (sutra2.ModPath_Well.ModPathWell method)
C
calc_advective_microbial_removal() (sutra2.removal_functions.MicrobialRemoval method)
(sutra2.Transport_Removal.Transport method)
calc_flux_cell() (sutra2.ModPath_Well.ModPathWell method)
calc_lambda() (sutra2.removal_functions.MicrobialRemoval method)
(sutra2.Transport_Removal.Transport method)
calc_traveltime_vadose_analytical() (sutra2.ModPath_Well.ModPathWell method)
cell_bounds() (sutra2.ModPath_Well.ModPathWell method)
compute_concentration_in_well_at_date() (sutra2.Transport_Removal.Transport method)
compute_omp_removal() (sutra2.Transport_Removal.Transport method)
compute_pathogen_removal() (sutra2.Transport_Removal.Transport method)
conc_gw (sutra2.Transport_Removal.Transport attribute)
conc_start (sutra2.Transport_Removal.Transport attribute)
create_bas() (sutra2.ModPath_Well.ModPathWell method)
create_dis() (sutra2.ModPath_Well.ModPathWell method)
create_lpf() (sutra2.ModPath_Well.ModPathWell method)
create_mfobject() (sutra2.ModPath_Well.ModPathWell method)
create_MNW() (sutra2.ModPath_Well.ModPathWell method)
create_modflow_input() (sutra2.ModPath_Well.ModPathWell method)
create_modflow_packages() (sutra2.ModPath_Well.ModPathWell method)
create_modpath_packages() (sutra2.ModPath_Well.ModPathWell method)
create_MP7object() (sutra2.ModPath_Well.ModPathWell method)
create_mpbas() (sutra2.ModPath_Well.ModPathWell method)
create_oc() (sutra2.ModPath_Well.ModPathWell method)
create_pcg() (sutra2.ModPath_Well.ModPathWell method)
create_rch() (sutra2.ModPath_Well.ModPathWell method)
create_wel() (sutra2.ModPath_Well.ModPathWell method)
cumulative_fraction_abstracted_water (sutra2.Analytical_Well.AnalyticalWell attribute)
D
df_flowline (sutra2.Analytical_Well.AnalyticalWell attribute)
(sutra2.Transport_Removal.Transport attribute)
,
[1]
df_output (sutra2.Analytical_Well.AnalyticalWell attribute)
df_particle (sutra2.Analytical_Well.AnalyticalWell attribute)
(sutra2.Transport_Removal.Transport attribute)
,
[1]
distance (sutra2.Analytical_Well.AnalyticalWell attribute)
distance_traveled (sutra2.Transport_Removal.Transport attribute)
E
endpoint_id (sutra2.Transport_Removal.Transport attribute)
extract_vadose_zone_parameters() (sutra2.ModPath_Well.ModPathWell method)
F
fill_df_flowline() (sutra2.ModPath_Well.ModPathWell method)
fill_df_particle() (sutra2.ModPath_Well.ModPathWell method)
fill_grid() (sutra2.ModPath_Well.ModPathWell method)
flux_fraction (sutra2.Analytical_Well.AnalyticalWell attribute)
G
generate_modflow_files() (sutra2.ModPath_Well.ModPathWell method)
get_node_ID() (sutra2.ModPath_Well.ModPathWell method)
get_node_indices() (sutra2.ModPath_Well.ModPathWell method)
grainsize (sutra2.Transport_Removal.Transport attribute)
H
head (sutra2.Analytical_Well.AnalyticalWell attribute)
HydroChemicalSchematisation (class in sutra2.Analytical_Well)
K
k_att: attachment coefficient [day-1]
L
lambda: removal coefficient [day-1], equals k_att + mu1
M
make_dictionary() (sutra2.Analytical_Well.HydroChemicalSchematisation method)
make_discretisation() (sutra2.ModPath_Well.ModPathWell method)
mbo: abbreviation for microbial organisms
mfmodelrun() (sutra2.ModPath_Well.ModPathWell method)
MicrobialOrganism (class in sutra2.Transport_Removal)
MicrobialRemoval (class in sutra2.removal_functions)
model_cbc (sutra2.ModPath_Well.ModPathWell attribute)
modpath_simulation() (sutra2.ModPath_Well.ModPathWell method)
ModPathWell (class in sutra2.ModPath_Well)
module
sutra2
sutra2.Analytical_Well
sutra2.ModPath_Well
sutra2.project_path
sutra2.removal_functions
sutra2.Transport_Removal
MP7modelrun() (sutra2.ModPath_Well.ModPathWell method)
mpbas_input() (sutra2.ModPath_Well.ModPathWell method)
mu1 (sutra2.Transport_Removal.Transport attribute)
mu1: inactivation coefficient [day-1]
O
omp_inialized (sutra2.Transport_Removal.Transport attribute)
Organism (class in sutra2.removal_functions)
organism_diam (sutra2.Transport_Removal.Transport attribute)
P
particle_data() (sutra2.ModPath_Well.ModPathWell method)
pH (sutra2.Transport_Removal.Transport attribute)
pH0 (sutra2.Transport_Removal.Transport attribute)
pH0: reference pH for which alpha0 was determined
phreatic() (sutra2.Analytical_Well.AnalyticalWell method)
plot_age_distribution() (sutra2.ModPath_Well.ModPathWell method)
(sutra2.Transport_Removal.Transport method)
plot_concentration() (sutra2.Transport_Removal.Transport method)
plot_depth_aquifers() (sutra2.Analytical_Well.AnalyticalWell method)
plot_logremoval() (sutra2.Transport_Removal.Transport method)
plot_travel_time_distribution() (sutra2.Transport_Removal.Transport method)
plot_travel_time_versus_cumulative_abstracted_water() (sutra2.Analytical_Well.AnalyticalWell method)
plot_travel_time_versus_radial_distance() (sutra2.Analytical_Well.AnalyticalWell method)
por_eff (sutra2.Transport_Removal.Transport attribute)
R
read_binarycbc_flow() (sutra2.ModPath_Well.ModPathWell method)
read_hdsobj() (sutra2.ModPath_Well.ModPathWell method)
read_pathlinedata() (sutra2.ModPath_Well.ModPathWell method)
redox (sutra2.Transport_Removal.Transport attribute)
rho_water (sutra2.Transport_Removal.Transport attribute)
run_model() (sutra2.ModPath_Well.ModPathWell method)
run_modflowmod() (sutra2.ModPath_Well.ModPathWell method)
run_ModPathmod() (sutra2.ModPath_Well.ModPathWell method)
S
schematisation (sutra2.Analytical_Well.AnalyticalWell attribute)
semiconfined() (sutra2.Analytical_Well.AnalyticalWell method)
spreading_distance (sutra2.Analytical_Well.AnalyticalWell attribute)
Substance (class in sutra2.Transport_Removal)
sutra2
module
sutra2.Analytical_Well
module
sutra2.ModPath_Well
module
sutra2.project_path
module
sutra2.removal_functions
module
sutra2.Transport_Removal
module
T
temp_water (sutra2.Transport_Removal.Transport attribute)
total_travel_time (sutra2.Analytical_Well.AnalyticalWell attribute)
tracking_direction (sutra2.Transport_Removal.Transport attribute)
Transport (class in sutra2.Transport_Removal)
travel_time_shallow_aquifer (sutra2.Analytical_Well.AnalyticalWell attribute)
travel_time_target_aquifer (sutra2.Analytical_Well.AnalyticalWell attribute)
travel_time_unsaturated (sutra2.Analytical_Well.AnalyticalWell attribute)
traveltime (sutra2.Transport_Removal.Transport attribute)
V
v_por (sutra2.Transport_Removal.Transport attribute)
W
well (sutra2.Transport_Removal.Transport attribute)
write_input_mp() (sutra2.ModPath_Well.ModPathWell method)
X
xyz_to_layrowcol() (sutra2.ModPath_Well.ModPathWell method)